g:GOSt Gene Group Functional Profiling
 g:Cocoa Compact Compare of Annotations
 g:Convert Gene ID Converter
 g:Sorter Expression Similarity Search
 g:Orth Orthology search
Welcome! About Contact Beta Archives R
J. Reimand, M. Kull, H. Peterson, J. Hansen, J. Vilo: g:Profiler -- a web-based toolset for functional profiling of gene lists from large-scale experiments (2007) NAR 35 W193-W200 [PDF]
J. Reimand, T. Arak, J. Vilo: g:Profiler -- a web server for functional interpretation of gene lists (2011 update) Nucleic Acids Research 2011; doi: 10.1093/nar/gkr378 [PDF]
[?] Organism

[?] Query (genes, proteins, probes, term)

[?] or Term ID:

Example or random query
Options
[?] Significant only
[?] Ordered query
[?] No electronic GO annotations
[?] Chromosomal regions
[?] Hierarchical sorting
[?] Hierarchical filtering

[?] Output type

[?] Gene list as a stat. background
[?]  User p-value
[?] Max size of functional category

[?] Numeric IDs treated as

[?] Significance threshold

[?] Statistical domain size


Download g:Profiler data as GMT:
ENSG, name
Z [?] Inferred from experiment (IDA, IPI, IMP, IGI, IEP)
D M Direct assay [IDA] / Mutant phenotype [IMP]
G P Genetic interaction [IGI] / physical interaction [IPI]
X S Y Expression pattern [IEP] / Sequence or structural similarity [ISS] / Genomic context [IGC]
A a C Traceable author [TAS] / Non-traceable author [NAS] / Inferred by curator [IC]
E e Reviewed computational analysis [RCA] / Electronic annotation [IEA]
# Multiple GO evidence codes
O ? No data [ND] / Not annotated
k r KEGG/REACTOME pathway
m mi [?] TRANSFAC regulatory motifs / [?] MicroCosm microRNA sites
co [?] CORUM protein complexes
h [?] Human disease genes from Human Phenotype Ontology
hh [?] Sequence homologs of human disease genes, Human Phenotype Ontology
bi [?] BioGRID protein-protein interaction networks
graph node BioGRID protein-protein interactions in gene query
graph node BioGRID protein-protein interactions in network neighborhood
>> g:Convert
Gene ID Converter
>> g:Orth
Orthology Search
>> g:Sorter
Expression Similarity Search
>> g:Cocoa
Compact Compare of Annotations
>> Static URL
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No results found, please check your query (KEGG:00100) or organism (mmusculus) or disable option Display significant results only!



g:Profiler 2005-2011
Jüri Reimand & Tambet Arak & Jaak Vilo @ BIIT Group, Institute of Computer Science, University of Tartu, Estonia.