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P. Adler, R. Kolde, M. Kull, A. Tkatšenko, H. Peterson, J. Reimand and J. Vilo: Mining for coexpression across hundreds of datasets using novel rank aggregation and visualisation methods (2009) Genome Biology [abstract]
R. Kolde, S. Laur, P. Adler and J. Vilo: Robust rank aggregation for gene list integration and meta-analysis (2011) Bioinformatics [abstract]
Enter gene ID(s) (for example: Jun, 203325_s_at, ENSG00000204531, ...) [?] Database: [?]
1 UTP8 1.1 4873_AT(UTP8) Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA
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Dataset list (in query) [106 ds]

E-GEOD-1975 E-GEOD-1975 Transcription profiling and genotyping, detection of allele specific gene expression of Saccharomyces BY, isogenic to S288C, and RM, a wild vineyard strain [AE][EV][DE]
E-GEOD-25582 E-GEOD-25582 Time course expression data in wild-type and TF-deletion yeast [AE][EV][DE]
E-GEOD-1938 E-GEOD-1938 Transcription profiling of S. cerevisiae phosphomannose isomerase PMI40 deletion strain grown on mannose [AE][EV][DE]
E-GEOD-1934 E-GEOD-1934 Transcription profiling time series IFH1 overexpression by galactose induction in S. cerevisiae [AE][EV][DE]
E-GEOD-8326 E-GEOD-8326 Transcription profiling of S. cerevisiae to investigate repression of pleiotrophic drug resistance genes in using chimeric transcriptional repressors [AE][EV][DE]
E-GEOD-7645 E-GEOD-7645 Transcription profiling of S. cerevisiae oxidative stress response [AE][EV][DE]
E-GEOD-7820 E-GEOD-7820 Transcription profiling and proteomic profiling of Saccharomyces cerevisiae wild-type and GPA2 mutant strains [AE][EV][DE]
E-GEOD-15254 E-GEOD-15254 Integration of the general amino acid control and nitrogen regulatory pathways in yeast nitrogen assimilation [AE][EV][DE]
E-GEOD-23204 E-GEOD-23204 The Role of the Rad4-Rad23 Complex and Rad4 Ubiquitination in UV-Responsive Transcription [AE][EV][DE]
E-GEOD-3821 E-GEOD-3821 Transcription profiling of S. cerevisiae exposed to the sudden addition of glucose - short term perturbation [AE][EV][DE]
E-MEXP-580 E-MEXP-580 Transcription profiling of S. cerevisiae response to nitrosative stress [AE][EV][DE]
E-MEXP-922 E-MEXP-922 Transcription profiling of yeast with a fumarase point mutation or knock-out to model hereditary leiomyomatosis and renal cell cancer [AE][EV][DE]
E-GEOD-10521 E-GEOD-10521 Specific Roles for the Ccr4-Not Complex Subunits in Expression of the Genome [AE][EV][DE]
E-GEOD-8536 E-GEOD-8536 Transcription profiling of S. cerevisiae response to stress throughout a 15-day wine fermentation [AE][EV][DE]
E-GEOD-3076 E-GEOD-3076 Transcription profiling time series of S. cerevisiae wild type and upf1 mutant strains following transcription inhibition by thiolutin [AE][EV][DE]
E-GEOD-8897 E-GEOD-8897 Transcription profiling of S. cerevisiae during prolonged maltose limited cultivation [AE][EV][DE]
E-GEOD-7188 E-GEOD-7188 Transcription profiling of S. cerevisiae treated with gentamicin [AE][EV][DE]
E-GEOD-27541 E-GEOD-27541 Transcriptional responses to glucose in Saccharomyces cerevisiae strains lacking a functional protein kinase A [AE][EV][DE]
E-GEOD-8761 E-GEOD-8761 Transcription profiling of S. cerevisiae ribosomal protein knockouts [AE][EV][DE]
E-GEOD-8379 E-GEOD-8379 Transcription profiling of Saccharomyces cerevisiae reveals Stb3 deletion affects gene expression within 10 minutes of glucose addition [AE][EV][DE]
E-MEXP-2818 E-MEXP-2818 Transcription profiling by array of yeast desiccation stress response in a time series [AE][EV][DE]
E-GEOD-9295 E-GEOD-9295 Transcription profiling of S. cerevisiae with modulated expression of base excision repair players [AE][EV][DE]
E-GEOD-31143 E-GEOD-31143 Coordinated increase in cellular RNA and protein content induced by overexpression of Far1, a cyclin dependent kinase inhibitor, involves large transcriptional reprogramming and requires the Sfp1 protein. [AE][EV][DE]
E-GEOD-9644 E-GEOD-9644 Transcription profiling of S. cerevisiae sfp1delta continuous cultures treated with glucode pulse [AE][EV][DE]
E-MEXP-442 E-MEXP-442 Transcription profiling of yeast cells (homozygous deletion mutants of BY4743) grown in chemostats, sampled at steady state. Glucose and ammonium limitation, dilution rates 0.1 and 0.2 hr-1, gene deletions HO and HAP4 applied [AE][EV][DE]
E-MEXP-2354 E-MEXP-2354 Transcription profiling of Saccharomyces cerevisiae Gis1 overexpression time course [AE][EV][DE]
E-GEOD-9514 E-GEOD-9514 Transcription profiling of S. cerevisiae response to heme deficiency and hypoxia [AE][EV][DE]
E-GEOD-9482 E-GEOD-9482 Transcription profiling of Saccharomyces cerevisiae nmd2::HIS3 GAL-NMD2 strain [AE][EV][DE]
E-MEXP-593 E-MEXP-593 Transcription profiling of yeast grown in fermentors at different dilution rates [AE][EV][DE]
E-GEOD-5290 E-GEOD-5290 Transcription profiling of S. cerevisiae temperature sensitive eIF5A mutant shows accumulation of transcripts targeted to the Nonsense Mediated Decay pathway [AE][EV][DE]
E-GEOD-2343 E-GEOD-2343 Transcription profiling of S. cerevisiae TFIIH mutants treated with methyl methanesulfonate [AE][EV][DE]
E-GEOD-15269 E-GEOD-15269 Transcription profiling of Saccharomyces cerevisiae mutant delta-spe3 delta-fms1 after spermidine treatment [AE][EV][DE]
E-GEOD-1723 E-GEOD-1723 Transcription profiling of S. cerevisiae chemostat cultures limiting for carbon, nitrogen, phosphorus, sulfur under aerobic and anaerobic conditions [AE][EV][DE]
E-GEOD-10031 E-GEOD-10031 Transcription profiling of Saccharomyces cerevisiae delta-rsf1mutant during growth on, and transition to growth on glycerol as sole carbon source [AE][EV][DE]
E-GEOD-29529 E-GEOD-29529 Transcriptome profiling of Saccharomyces cerevisiae during a transition from fermentative to glycerol-based respiratory growth reveals extensive metabolic and structural remodeling. [AE][EV][DE]
E-GEOD-27308 E-GEOD-27308 Using Model Organism Saccharomyces Cerevisiae to Evaluate the Differential Effects of ELF-MF and RF-EMF exposure on Global Gene Expression [AE][EV][DE]
E-GEOD-12890 E-GEOD-12890 Transcription profiling Saccharomyces cerevisiae xylose metabolism [AE][EV][DE]
E-MEXP-2159 E-MEXP-2159 Transcription profiling of Saccharomyces cerevisiae reveals the Cbf1 basic helix-loop-helix transcription factor is required for the response to hydrogen peroxide stress [AE][EV][DE]
E-TABM-291 E-TABM-291 Transcription profiling of yeast temperature-sensitive abf1-1 cells when grown at the restrictive temperature of 37oC as compared to wild-type cells grown under same conditions [AE][EV][DE]
E-GEOD-1693 E-GEOD-1693 Transcription profiling of S. cerevisiae novel response to microtubule perturbation in meiosis [AE][EV][DE]
E-MEXP-323 E-MEXP-323 Transcription profiling of amino-acid starved yeast cells to monitor the transcript level and also the translation status for each RNA [AE][EV][DE]
E-MEXP-130 E-MEXP-130 Transcription profiling of four yeast strains grown in SC medium and shifted for 2.5h to 37C: YRA1 wild type, YRA1 mlp2916; GFP-yra1-8, and GFP-yra1-8 mlp2916 [AE][EV][DE]
E-MEXP-585 E-MEXP-585 Transcription profiling of yeast rho0 cells (complete deletion of the mitochondrial genome), in cells with either a single defective enzyme or several, vs cells after prolonged treatment with the bc1 inhibitors myxothiazol or antimycin to analyse respiratory defects [AE][EV][DE]
E-MEXP-2740 E-MEXP-2740 Transcription profiling by array of yeast wild type and Dhaa1 deletion mutants following acetic acid stress [AE][EV][DE]
E-TABM-448 E-TABM-448 Transcription profiling of yeast wild type, Mig1, Mig2 and Mig3 single, double and triple knock outs [AE][EV][DE]
E-GEOD-12150 E-GEOD-12150 Transcription profiling of yeast with Anc1p or without under basal or MMS exposed conditions [AE][EV][DE]
E-MEXP-27 E-MEXP-27 Transcription profiling of yeast wild type, xrn1, xrn1 upf1, xrn1 nmd2, and xrn1 upf3 strains to investigate mRNA decay [AE][EV][DE]
E-MEXP-526 E-MEXP-526 Transcription profiling and translation status analysis in yeast with hydrogen peroxide and cycloheximide treatment [AE][EV][DE]
E-GEOD-31634 E-GEOD-31634 Laboratory evolution of Jen1p-independent lactate transport in Saccharomyces cerevisiae: identification of ADY2 alleles by whole genome resequencing and mRNA expression analysis [AE][EV][DE]
E-GEOD-22574 E-GEOD-22574 Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures [AE][EV][DE]
E-GEOD-31390 E-GEOD-31390 Gene expression profile of Tra1 dependent genes [AE][EV][DE]
E-GEOD-8900 E-GEOD-8900 Transcription profiling of S. cerevisiae to high carbon dioxide concentrations [AE][EV][DE]
E-GEOD-1313 E-GEOD-1313 Transcription profiling of the response of Saccharomyces cerevisiae to dessication and rehydration: Series 3 [AE][EV][DE]
E-GEOD-1312 E-GEOD-1312 Transcription profiling of the response of Saccharomyces cerevisiae to dessication and rehydration: Series 2 [AE][EV][DE]
E-GEOD-22602 E-GEOD-22602 Extreme calorie restriction and energy source starvation in Saccharomyces cerevisiae represent distinct physiological states [AE][EV][DE]
E-GEOD-18128 E-GEOD-18128 Transcription profiling of yeast to investigate the involvement of Snf7 and Rim101 in regulation of TIR1 and anaerobically up-regulated genes [AE][EV][DE]
E-GEOD-7338 E-GEOD-7338 Transcription profiling of S. cerevisiae Histone H2A K4,7G mutant vs. wild type [AE][EV][DE]
E-MTAB-78 E-MTAB-78 Transcription profiling of yeast grown in a three-factor design to study the relationship between specific growth rate and genome-wide gene expression [AE][EV][DE]
E-MEXP-1459 E-MEXP-1459 Transcription profiling of yeast over-expressing the meiosis-specific gene SPO13 during the mitotic cell cycle [AE][EV][DE]
E-TABM-573 E-TABM-573 Transcription profiling of wild type and delta-sba1 yeast treated with radicicol to study gene regulation by sba1 [AE][EV][DE]
E-MEXP-822 E-MEXP-822 Transcription profiling of diploid and tetraploid yeast cell cultures [AE][EV][DE]
E-GEOD-26770 E-GEOD-26770 PHO4 target expression for yeast S. cerevisiae under phosphate perturbation [AE][EV][DE]
E-GEOD-18644 E-GEOD-18644 Expression analysis in yeast model of Huntington's disease (HD) [AE][EV][DE]
E-GEOD-7337 E-GEOD-7337 Transcription profiling of S. cerevisiae H2A4-20 mutants vs. wild types [AE][EV][DE]
E-GEOD-1639 E-GEOD-1639 Transcription profiling of S. cerevisiae RPD3 deletion mutants and histone H3 and H4 amino-terminus mutants [AE][EV][DE]
E-GEOD-6331 E-GEOD-6331 Transcription profiling of S. cerevisiae histone mutants H3,K4,79R and H3,K4,36,79R (at 0, 6, and 9 hours) Mutations [AE][EV][DE]
E-GEOD-19156 E-GEOD-19156 Transcription profiling of S. cerevisiaeAir-liquid interfacial biofilm vs planktonic S. cerevisiae cells [AE][EV][DE]
E-GEOD-4135 E-GEOD-4135 Transcription profiling of S. cerevisiae wild type and amino-terminal mutant histone H3 and H4 strains [AE][EV][DE]
E-MEXP-26 E-MEXP-26 Transcription profiling of yeast to analyse mRNAs regulated by the nonsense-mediated and 5 to 3 mRNA Decay Pathways [AE][EV][DE]
E-GEOD-6185 E-GEOD-6185 Transcription profiling of S. cerevisiae stress response to exposure of the natural product pyocyanin. [AE][EV][DE]
E-GEOD-970 E-GEOD-970 Transcription profiling of S. cerevisiae GPCR mutants gpr1 and gpa2 [AE][EV][DE]
E-GEOD-4807 E-GEOD-4807 Transcription profiling of S. cerevisiae in carbon-limited anaerobic/aerobic growth [AE][EV][DE]
E-GEOD-17867 E-GEOD-17867 Metabolically engineered urea degrading and urea importing Sake yeast strains K7 (WT), K7 Dur1,2 and K7 Dur3 [AE][EV][DE]
E-GEOD-6705 E-GEOD-6705 Transcription profiling of S. cerevisiae cbc2-delta cells [AE][EV][DE]
E-GEOD-8895 E-GEOD-8895 Transcription profiling of S. cerevisiae grown in acetate, ethanol and maltose limited conditions to investigate transcriptional regulation in controlling fluxes in central carbon metabolism [AE][EV][DE]
E-GEOD-30535 E-GEOD-30535 Engineering topology and kinetics of sucrose metabolism in Saccharomyces cerevisiae for improved ethanol yield [AE][EV][DE]
E-GEOD-12479 E-GEOD-12479 Transcriptional changes due to the [GAR+] prion [AE][EV][DE]
E-GEOD-8902 E-GEOD-8902 Transcription profiling of S. cerevisiae to investigate formaldehyde as source of free-energy during growth on glucose [AE][EV][DE]
E-GEOD-1311 E-GEOD-1311 Transcription profiling of the response of Saccharomyces cerevisiae to dessication and rehydration: Series 1 [AE][EV][DE]
E-GEOD-1314 E-GEOD-1314 Transcription profiling of S. cerevisiae laboratory strain BY4743 and commercial dry active yeast [AE][EV][DE]
E-GEOD-6620 E-GEOD-6620 Transcription profiling of S. cerevisiae mre11, rad50 and spo11 mutants in premeiosis and meiotic prophase [AE][EV][DE]
E-GEOD-8673 E-GEOD-8673 Transcription profiling of Saccharomyces cerevisiae commercial bakers yeast response to freeze injuries [AE][EV][DE]
E-MEXP-727 E-MEXP-727 Transcription profiling of yeast respiration-related deletion mutants [AE][EV][DE]
E-MEXP-724 E-MEXP-724 Transcription profiling of yeast under conditions of ammonium, L-alanine or L-glutamine limitation [AE][EV][DE]
E-MEXP-1020 E-MEXP-1020 Transcription profiling of TBP1(E186D) yeast [AE][EV][DE]
E-GEOD-11871 E-GEOD-11871 Transcription profiling of Saccharomyces cerevisiae to investigate the role of rad23/rad4 protein complex in transcription and DNA repair in yeast [AE][EV][DE]
E-GEOD-10073 E-GEOD-10073 Transcription profiling of S. cerevisiae response to the antifungal compound sampangine [AE][EV][DE]
E-GEOD-6073 E-GEOD-6073 Transcription profiling of yeast Rap1 and Abf1 DNA-binding temperature sensitive mutants and wild type controls [AE][EV][DE]
E-MEXP-1139 E-MEXP-1139 Transcription profiling of yeast strains BY4743, Gis1delta and Rim15delta grown in ethanol- or glucose-limiting media [AE][EV][DE]
E-GEOD-6327 E-GEOD-6327 Transcription profiling of S. cerevisiae Histone H3 K4,36,79R mutant 6 hr [AE][EV][DE]
E-MEXP-1308 E-MEXP-1308 Translation profiling of yeast caf20 mutants [AE][EV][DE]
E-MEXP-1309 E-MEXP-1309 Translation profiling of yeast eap1 mutants [AE][EV][DE]
E-GEOD-9232 E-GEOD-9232 Transcription profiling of S. cerevisiae treated with absence of oxygen or depletion of ATP to investigate control of glycolytic enzyme fluxes [AE][EV][DE]
E-GEOD-11236 E-GEOD-11236 Transcription profiling of S. cerevisiae cth1cth2 cells independently transformed with pRS416 (V), pRS416-CTH1 (C) or pRS416-CTH2 (T) reveals cooperation of two mRNA-binding proteins drives metabolic adaptation to iron deficiency [AE][EV][DE]
E-GEOD-27539 E-GEOD-27539 Transcriptome analysis of arabinose fermentation by engineered Saccharomyces cerevisiae [AE][EV][DE]
E-GEOD-9590 E-GEOD-9590 Transcription profiling of S. cerevisiae TPP 2-oxo acid decarboxylases [AE][EV][DE]
E-GEOD-31391 E-GEOD-31391 Analysis of Gal4-directed transcription activation using Tra1 mutants selectively defective for interaction with Gal4 [AE][EV][DE]
E-GEOD-10554 E-GEOD-10554 Transcription profiling of Saccharomyces cerevisiae treated WITH Pterostilbene, a NATURAL Dimethylether Analog OF Resveratrol [AE][EV][DE]
E-GEOD-15094 E-GEOD-15094 Transcription profiling of S. cerervisiae chemostat growth samples reveals resistance to hop iso-I?-acids in yeast involves active export and vacuolar sequestration [AE][EV][DE]
E-GEOD-9432 E-GEOD-9432 Transcription profiling of S. cerevisiae wild type reference strain, two simple mutants (not1-2 and spt3) and one double mutant (not1-2 spt3) reveals a SAGA-Independent function of SPT3 mediates transcriptional deregulation in a mutant of the Ccr4-Not Complex [AE][EV][DE]
E-GEOD-31389 E-GEOD-31389 Gene expression profile of Tra1 GID (Gal4 interaction defective) mutants [AE][EV][DE]
E-GEOD-9486 E-GEOD-9486 Transcription profiling of S. cerevisiae to identify Upf1p-associated transcripts in S. cerevisiae [AE][EV][DE]
E-GEOD-8898 E-GEOD-8898 Transcription profiling of S. cerevisiae after prolonged selection in aerobic, glucose-limited chemostat cultures [AE][EV][DE]
E-GEOD-6319 E-GEOD-6319 Transcription profiling of S. cerevisiae Histone H3 K4,79R mutant vs. wild type [AE][EV][DE]
E-MAXD-15 E-MAXD-15 Comparative genomic hybridization of Saccharomyces boulardii and Saccharomyces cerevisiae to determine genomic differences [AE][EV][DE]
E-GEOD-29530 E-GEOD-29530 The YJR127C/ZMS1 gene product is involved in glycerol-based respiratory growth of the yeast Saccharomyces cerevisiae. [AE][EV][DE]

Dataset list (filtered out) [0 ds]

Gene list [query + 50 genes]
#Score#Gene name#probeset id#Gene description
#QUERYUTP84873_ATNucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA [Source:SGD;Acc:S000003360]
5.41e-75RIX14311_atComponent of the Rix1 complex and possibly pre-replicative complexes; required for processing of ITS2 sequences from 35S pre-rRNA; component of the pre-60S ribosomal particle with the dynein-related AAA-type ATPase Mdn1p; required for pre-replicative complex (pre-RC) formation and maintenance during DNA replication licensing; relocalizes to the cytosol in response to hypoxia; essential gene [Source:SGD;Acc:S000001240]
8.84e-67UTP94310_atNucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA [Source:SGD;Acc:S000001239]
1.01e-62ROK15164_atRNA-dependent ATPase; involved in pre-rRNA processing at sites A0, A1, and A2, and in control of cell cycle progression; contains two upstream open reading frames (uORFs) in 5' untranslated region which regulate translation [Source:SGD;Acc:S000003139]
9.6e-57UTP254175_atNucleolar protein; required for 35S pre-RNA processing and 40S ribosomal subunit biogenesis [Source:SGD;Acc:S000001353]
4.54e-55YTM18293_atConstituent of 66S pre-ribosomal particles; forms a complex with Nop7p and Erb1p that is required for maturation of the large ribosomal subunit; has seven C-terminal WD repeats [Source:SGD;Acc:S000005798]
6.23e-55URA77413_atMajor CTP synthase isozyme (see also URA8); catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis; capable of forming cytoplasmic filaments termed cytoophidium, especially during conditions of glucose depletion; URA7 has a paralog, URA8, that arose from the whole genome duplication [Source:SGD;Acc:S000000135]
1.69e-54NOC47587_atNucleolar protein; forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000006348]
2.12e-54RRP16411_atEssential evolutionarily conserved nucleolar protein; necessary for biogenesis of 60S ribosomal subunits and for processing of pre-rRNAs to mature rRNA; associated with several distinct 66S pre-ribosomal particles [Source:SGD;Acc:S000002494]
1.58e-53SSF14447_atConstituent of 66S pre-ribosomal particles; required for ribosomal large subunit maturation; functionally redundant with Ssf2p; member of the Brix family; SSF1 has a paralog, SSF2, that arose from the whole genome duplication [Source:SGD;Acc:S000001108]
4.71e-53RRP86407_atNucleolar S-adenosylmethionine-dependent rRNA methyltransferase; methylates adenine (m1A) of the large subunit (LSU) rRNA at position 645; involved in pre-rRNA cleavage at site A2; mutation is synthetically lethal with a gar1 mutation; deletion disrupts telomere maintenance by influencing the expression of neighboring gene STN1 [Source:SGD;Acc:S000002490]
4.73e-53MAK216429_atConstituent of 66S pre-ribosomal particles; required for large (60S) ribosomal subunit biogenesis; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; involved in nuclear export of pre-ribosomes; required for maintenance of dsRNA virus; homolog of human CAATT-binding protein [Source:SGD;Acc:S000002467]
1.71e-52NUG15705_atGTPase that associates with nuclear 60S pre-ribosomes; required for export of 60S ribosomal subunits from the nucleus [Source:SGD;Acc:S000000808]
1.24e-51RRP34446_atProtein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity [Source:SGD;Acc:S000001107]
1.32e-51LSG15098_atPutative GTPase involved in 60S ribosomal subunit biogenesis; required for the release of Nmd3p from 60S subunits in the cytoplasm [Source:SGD;Acc:S000003067]
2.92e-51RTT107932_atWD40 domain-containing protein involved in endosomal recycling; forms a complex with Rrt2p that functions in the retromer-mediated pathway for recycling internalized cell-surface proteins; evidence it interacts with Trm7p for 2'-O-methylation of N34 of substrate tRNAs; has a role in regulation of Ty1 transposition; human ortholog is WDR6 [Source:SGD;Acc:S000006104]
4.83e-51IPI39032_atComponent of the Rix1 complex and pre-replicative complexes (pre-RCs); required for processing of ITS2 sequences from 35S pre-rRNA; component of the pre-60S ribosomal particle with the dynein-related AAA-type ATPase Mdn1p; required for pre-RC formation and maintenance during DNA replication licensing; highly conserved protein which contains several WD40 motifs; IPI3 is an essential gene; other members include Rix1p, Ipi1p, and Ipi3p [Source:SGD;Acc:S000005126]
4.79e-50NHP26700_atProtein related to mammalian high mobility group (HMG) proteins; nuclear protein; essential for function of H/ACA-type snoRNPs, which are involved in 18S rRNA processing [Source:SGD;Acc:S000002367]
1.13e-49NSA25566_atProtein constituent of 66S pre-ribosomal particles; contributes to processing of the 27S pre-rRNA [Source:SGD;Acc:S000000928]
5.16e-49UTP149752_atSubunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit [Source:SGD;Acc:S000004558]
1.35e-48NOP74893_atComponent of several different pre-ribosomal particles; forms a complex with Ytm1p and Erb1p that is required for maturation of the large ribosomal subunit; required for exit from G0 and the initiation of cell proliferation [Source:SGD;Acc:S000003335]
3.72e-47ATC16286_atNuclear protein; possibly involved in regulation of cation stress responses and/or in the establishment of bipolar budding pattern; relative distribution to the nucleus decreases upon DNA replication stress [Source:SGD;Acc:S000002592]
4.51e-47PRP435122_atRNA helicase in the DEAH-box family; functions in both RNA polymerase I and polymerase II transcript metabolism; catalyzes removal of U2, U5, and U6 snRNPs from the postsplicing lariat-intron ribonucleoprotein complex; required for efficient biogenesis of both small- and large-subunit rRNAs; acts with Sqs1p to promote 20S to 18S rRNA processing catalyzed by endonuclease Nob1p [Source:SGD;Acc:S000003088]
5.48e-47BMT54170_atMethyltransferase required for m3U2634 methylation of the 25S rRNA; S-adenosylmethionine-dependent; associates with precursors of the 60S ribosomal subunit; predicted to be involved in ribosome biogenesis [Source:SGD;Acc:S000001358]
1.98e-46ENP24845_atComponent of the SSU; required for pre-18S rRNA processing, biogenesis of the small ribosomal subunit; interacts with U3 snoRNA, Mpp10p and Bfr2p; contains WD repeats, and has homology to Spb1p [Source:SGD;Acc:S000003377]
2.09e-46DPH14207_atProtein required for synthesis of diphthamide; required along with Dph2p, Kti11p, Jjj3p, and Dph5p; diphthamide is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph2p and Kti11p [Source:SGD;Acc:S000001365]
1.29e-45RRT144229_atPutative protein of unknown function; identified in a screen for mutants with decreased levels of rDNA transcription; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; predicted to be involved in ribosome biogenesis [Source:SGD;Acc:S000001389]
1.61e-45TRM77284_at2'-O-ribose methyltransferase; methylates the 2'-O-ribose of tRNA-Phe, tRNA-Trp, and tRNA-Leu at positions C32 and N34 of the tRNA anticodon loop; crucial biological role likely modification of tRNA-Phe; interacts with Trm732p and Rtt10p in 2'-O-methylation of C32 and N34 substrate tRNAs, respectively [Source:SGD;Acc:S000000265]
3.35e-45RNT19378_atNuclear dsRNA-specific ribonuclease (RNase III); involved in rDNA transcription, rRNA processing and U2 snRNA 3' end formation by cleavage of a stem-loop structure at the 3' end of U2 snRNA; involved in polyadenylation-independent transcription termination; involved in the cell wall stress response, regulating the degradation of cell wall integrity and morphogenesis checkpoint genes [Source:SGD;Acc:S000004852]
4.38e-45ERB19580_atConstituent of 66S pre-ribosomal particles; forms a complex with Nop7p and Ytm1p that is required for maturation of the large ribosomal subunit; required for maturation of the 25S and 5.8S ribosomal RNAs; homologous to mammalian Bop1 [Source:SGD;Acc:S000004652]
4.45e-45DBP84374_atATPase, putative RNA helicase of the DEAD-box family; component of 90S preribosome complex involved in production of 18S rRNA and assembly of 40S small ribosomal subunit; ATPase activity stimulated by association with Esf2p [Source:SGD;Acc:S000001212]
1.28e-44RPF210506_atEssential protein involved in rRNA maturation and ribosomal assembly; involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles [Source:SGD;Acc:S000001789]
2.41e-44FAL16436_atNucleolar protein required for maturation of 18S rRNA; member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases [Source:SGD;Acc:S000002428]
2.13e-43CIC14482_atEssential protein that interacts with proteasome components; has a potential role in proteasome substrate specificity; also copurifies with 66S pre-ribosomal particles [Source:SGD;Acc:S000001094]
5.75e-43YVH14062_atProtein phosphatase; involved in vegetative growth at low temperatures, sporulation, and glycogen accumulation; mutants are defective in 60S ribosome assembly; member of the dual-specificity family of protein phosphatases [Source:SGD;Acc:S000001465]
5.87e-43LCP55567_atEssential protein involved in maturation of 18S rRNA; depletion leads to inhibited pre-rRNA processing and reduced polysome levels; localizes primarily to the nucleolus [Source:SGD;Acc:S000000929]
6.6e-43PWP26843_atConserved 90S pre-ribosomal component; essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis [Source:SGD;Acc:S000000653]
7.08e-43NSR14860_atNucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis [Source:SGD;Acc:S000003391]
1.41e-42SPB16923_atAdoMet-dependent methyltransferase; involved in rRNA processing and 60S ribosomal subunit maturation; methylates G2922 in the tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921; suppressor of PAB1 mutants [Source:SGD;Acc:S000000559]
2.05e-42RPS26B5571_atProtein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S26, no bacterial homolog; RPS26B has a paralog, RPS26A, that arose from the whole genome duplication [Source:SGD;Acc:S000000933]
3.15e-42PUS78309_atPseudouridine synthase; catalyzes pseudouridylation at positions 35 and 56 in U2 snRNA, position 50 in 5S rRNA, position 13 in cytoplasmic tRNAs, and position 35 in pre-tRNA(Tyr); also pseudouridylates some mRNAs; relocates from nucleus to cytoplasm during heat shock and differentially modifies some mRNAs during heat shock; conserved in archaea, vertebrates, and some bacteria [Source:SGD;Acc:S000005769]
6.37e-42RPA499101_atRNA polymerase I subunit A49; essential for nucleolar assembly and for high polymerase loading rate; required for nucleolar localization of Rpa34p [Source:SGD;Acc:S000005192]
7.28e-42TRM36574_at2'-O-ribose methyltransferase; catalyzes the ribose methylation of the guanosine nucleotide at position 18 of tRNAs [Source:SGD;Acc:S000002270]
1.59e-41RRP464931_atExosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp46p (EXOSC5) [Source:SGD;Acc:S000003327]
1.75e-41N/A4713_atPutative methyltransferase; may interact with ribosomes, based on co-purification experiments; predicted to be involved in ribosome biogenesis; null mutant is resistant to fluconazole; GFP-fusion protein localizes to the nucleolus; YGR283C has a paralog, YMR310C, that arose from the whole genome duplication [Source:SGD;Acc:S000003515]
2.4e-41N/A6782_atPutative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; YCR087C-A is not an essential gene [Source:SGD;Acc:S000007223]
2.43e-41TSR29882_atProtein with a potential role in pre-rRNA processing [Source:SGD;Acc:S000004427]
2.95e-41MTR34859_atExosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hMtr3p (EXOSC6) [Source:SGD;Acc:S000003390]
7.64e-41UTP159535_atNucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA [Source:SGD;Acc:S000004699]
7.95e-41GCD108926_atSubunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p; required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression [Source:SGD;Acc:S000005006]
1.16e-40N/A9267_atN/A
Multi-Experiment-Matrix © 2008-2015 | Priit Adler & Jaak Vilo @ Biit Group, Institute of Computer Science, University of Tartu
Tue Jun 27 01:49:30 2017
Tue Jun 27 01:49:34 2017
Duration : 0 m, 4 s
CMD      : 0 m, 0 s
Output   : 0 m, 3 s