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- analyses directed and undirected, weighted and unweighted heterogeneous networks of genes, proteins and microarray probesets for many eukaryotic genomes;
- integrates multiple diverse datasets into global networks;
- incorporates multispecies data using gene orthology mapping;
- filters nodes and edges based on dataset support, edge weight and node annotation;
- detects gene modules from networks using a collection of algorithms;
- interprets discovered modules using Gene Ontology, pathways, and cis-regulatory motifs.
